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DNA Barcoding of algae needs data transparency

In Organisms, Diversity & Evolution (Vol. 11, 2011) [1] a new DNA Barcode for diatoms has been proposed. The original data researched at the Botanic Garden and Botanical Museum Berlin-Dahlem has been made available online within the GBIF Germany project [2], funded by the German Ministry for Education and Research.

Jonas Zimmermann [3], Regine Jahn, and Birgit Gemeinholzer cite the primary biodiversity data, which is available via the AlgaTerra Information System [4] and will be fed into the Global Biodiversity Information Facility Network [5] (GBIF).

The DNA Barcode development at the BGBM began by a comparison between light microscopical and molecular data [6] in identifying diatoms.

Hantzschia amphioxys clone, used for barcoding

Hantzschia amphioxys (SEM, light microscopy). Photos: CC BY-SA 3.0 [7] R. Jahn (BGBM).

Stephanodiscus minutulus

Stephanodiscus minutulus (Light microscopy, SEM). Photos: CC BY-SA 3.0 [7] R. Jahn (BGBM).

  

List of taxa

Achnanthidium minutissimum (Kütz.) Czarn. [8]

Cocconeis pediculus Ehrenb. [9]

Cocconeis placentula Ehrenb. [10]

Cyclotella meneghiniana Kütz. [11]

Diatoma tenuis C.Agardh [12]

Encyonema minutum (Hilse) D.G.Mann [13]

Encyonema silesiacum (Bleisch) D.G.Mann [14]

Eolimna minima (Grunow) Lange-Bert. [15]

Fragilaria mesolepta Rabenh. [16]

Gomphonema parvulum Kütz. [17]

Hantzschia amphioxys (Ehrenb.) Grunow [18]

Mayamaea atomus var. permitis (Hust.) Lange-Bert. [19]

Melosira varians C.Agardh [20]

Navicula cryptocephala Kütz. [21]

Navicula gregaria Donkin [22]

Navicula slesvicensis Grunow [23]

Navicula tripunctata (O.F.Müll.) Bory [24]

Nitzschia acicularis (Kütz.) W.Sm. [25]

Nitzschia cf. fonticola "strain D15_023" [26]

Nitzschia cf. semirobusta "strain D32_012" [27]

Nitzschia dissipata (Kütz.) Rabenh. [28]

Nitzschia inconspicua Grunow [29]

Nitzschia linearis (C.Agardh) W.Sm. [30]

Nitzschia sigmoidea (Nitzsch) W.Sm. [31]

Pinnularia divergens W.Sm. [32]

Stauroneis phoenicenteron (Nitzsch) Ehrenb. [33]

Stephanodiscus minutulus (Kütz.) Cleve & Möller [34]

 

[W.-H. Kusber & R. Jahn, 8.11.2011]

 

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Links
[1] http://www.springerlink.com/content/k625787864247168/ [2] http://www.gbif.de [3] mailto:j.zimmermann@bgbm.org [4] http://www.algaterra.org/ [5] http://data.gbif.org/datasets/provider/21 [6] http://www.bgbm.org/bgbmpress/otherpubl/cediatom/cediatom113Jahn+al.pdf [7] http://creativecommons.org/licenses/by-sa/3.0/de/ [8] http://www.algaterra.org/ATDB/Names/NamesMain.cfm?NameId=17141&NameFk=10223 [9] http://www.algaterra.org/ATDB/Names/NamesMain.cfm?NameId=13930&NameFk=-1 [10] http://www.algaterra.org/ATDB/Names/NamesMain.cfm?NameId=13931&NameFk=-1 [11] http://www.algaterra.org/ATDB/Names/NamesMain.cfm?NameId=13628&NameFk=-1 [12] http://www.algaterra.org/ATDB/Names/NamesMain.cfm?NameId=13563&NameFk=18550 [13] http://www.algaterra.org/ATDB/Names/NamesMain.cfm?NameId=14931&NameFk=10597 [14] http://www.algaterra.org/ATDB/Names/NamesMain.cfm?NameId=14946&NameFk=10615 [15] http://www.algaterra.org/ATDB/Names/NamesMain.cfm?NameId=5453&NameFk=6049 [16] http://www.algaterra.org/ATDB/Names/NamesMain.cfm?NameId=28046&NameFk=-1 [17] http://www.algaterra.org/ATDB/Names/NamesMain.cfm?NameId=12785&NameFk=-1 [18] http://www.algaterra.org/ATDB/Names/NamesMain.cfm?NameId=8733&NameFk=2185 [19] http://www.algaterra.org/ATDB/Names/NamesMain.cfm?NameId=5239&NameFk=5856 [20] http://www.algaterra.org/ATDB/Names/NamesMain.cfm?NameId=13618&NameFk=-1 [21] http://www.algaterra.org/ATDB/Names/NamesMain.cfm?NameId=12225&NameFk=-1 [22] http://www.algaterra.org/ATDB/Names/NamesMain.cfm?NameId=17160&NameFk=-1 [23] http://www.algaterra.org/ATDB/Names/NamesMain.cfm?NameId=18863&NameFk=-1 [24] http://www.algaterra.org/ATDB/Names/NamesMain.cfm?NameId=7914&NameFk=2864 [25] http://www.algaterra.org/ATDB/Names/NamesMain.cfm?NameId=18914&NameFk=23857 [26] http://www.algaterra.org/ATDB/Names/NamesMain.cfm?NameId=28047&NameFk=-1 [27] http://www.algaterra.org/ATDB/Names/NamesMain.cfm?NameId=28048&NameFk=-1 [28] http://www.algaterra.org/ATDB/Names/NamesMain.cfm?NameId=12531&NameFk=11003 [29] http://www.algaterra.org/ATDB/Names/NamesMain.cfm?NameId=17165&NameFk=-1 [30] http://www.algaterra.org/ATDB/Names/NamesMain.cfm?NameId=17166&NameFk=-1 [31] http://www.algaterra.org/ATDB/Names/NamesMain.cfm?NameId=21905&NameFk=-1 [32] http://www.algaterra.org/ATDB/Names/NamesMain.cfm?NameId=12345&NameFk=-1 [33] http://www.algaterra.org/ATDB/Names/NamesMain.cfm?NameId=6820&NameFk=4014 [34] http://www.algaterra.org/ATDB/Names/NamesMain.cfm?NameId=18250&NameFk=18251